PoplarV1, Main, Exploration, bibRecord, 003905

Genome-wide identification of NBS resistance genes in Populus trichocarpa.

Identifieur interne : 003905 ( Main/Exploration ); précédent : 003904; suivant : 003906

Genome-wide identification of NBS resistance genes in Populus trichocarpa.

Auteurs : Annegret Kohler [France] ; Cécile Rinaldi ; Sébastien Duplessis ; Marie Baucher ; Danny Geelen ; Frédéric Duchaussoy ; Blake C. Meyers ; Wout Boerjan ; Francis Martin

Source :

Plant molecular biology [ 0167-4412 ] ; 2008.

RBID : pubmed:18247136

Descripteurs français

English descriptors

KwdEn :
- Amino Acid Sequence (MeSH), Arabidopsis (genetics), Gene Expression Regulation, Plant (MeSH), Genome, Plant (MeSH), Green Fluorescent Proteins (genetics), Green Fluorescent Proteins (metabolism), Immunity, Innate (genetics), Microscopy, Confocal (MeSH), Molecular Sequence Data (MeSH), Oligonucleotide Array Sequence Analysis (methods), Oryza (genetics), Phylogeny (MeSH), Plant Diseases (genetics), Plant Proteins (genetics), Plant Proteins (metabolism), Plants, Genetically Modified (MeSH), Populus (genetics), Proteins (classification), Proteins (genetics), Proteins (metabolism), Recombinant Fusion Proteins (genetics), Recombinant Fusion Proteins (metabolism), Tobacco (cytology), Tobacco (genetics).
MESH :
- chemical , classification : Proteins.
- chemical , genetics : Green Fluorescent Proteins, Plant Proteins, Proteins, Recombinant Fusion Proteins.
- cytology : Tobacco.
- genetics : Arabidopsis, Immunity, Innate, Oryza, Plant Diseases, Populus, Tobacco.
- chemical , metabolism : Green Fluorescent Proteins, Plant Proteins, Proteins, Recombinant Fusion Proteins.
- methods : Oligonucleotide Array Sequence Analysis.
- Amino Acid Sequence, Gene Expression Regulation, Plant, Genome, Plant, Microscopy, Confocal, Molecular Sequence Data, Phylogeny, Plants, Genetically Modified.

Abstract

As the largest class of disease resistance R genes, the genes encoding nucleotide binding site and leucine-rich repeat proteins ("NBS-LRR genes") play a critical role in defending plants from a multitude of pathogens and pests. The diversity of NBS-LRR genes was examined in the Populus trichocarpa draft genome sequence. The NBS class of genes in this perennial tree is large and diverse, comprised of approximately 400 genes, at least twice the complement of Arabidopsis. The NBS family can be divided into multiple subfamilies with distinct domain organizations. It includes 119 Coiled-Coil-NBS-LRR genes, 64 TIR-NBS-LRR genes, 34 BED-finger-NBS-LRR, and both truncated and unusual NBS- and NBS-LRR-containing genes. The transcripts of only 34 NBS-LRR genes were detected in rust-infected and non-infected leaves using a whole-genome oligoarray. None showed an altered expression two days post inoculation.

DOI: 10.1007/s11103-008-9293-9
PubMed: 18247136

Affiliations:

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 003954
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Le document en format XML

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<author><name sortKey="Duchaussoy, Frederic" sort="Duchaussoy, Frederic" uniqKey="Duchaussoy F" first="Frédéric" last="Duchaussoy">Frédéric Duchaussoy</name>
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<author><name sortKey="Duplessis, Sebastien" sort="Duplessis, Sebastien" uniqKey="Duplessis S" first="Sébastien" last="Duplessis">Sébastien Duplessis</name>
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<term>Arabidopsis (genetics)</term>
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<term>Genome, Plant (MeSH)</term>
<term>Green Fluorescent Proteins (genetics)</term>
<term>Green Fluorescent Proteins (metabolism)</term>
<term>Immunity, Innate (genetics)</term>
<term>Microscopy, Confocal (MeSH)</term>
<term>Molecular Sequence Data (MeSH)</term>
<term>Oligonucleotide Array Sequence Analysis (methods)</term>
<term>Oryza (genetics)</term>
<term>Phylogeny (MeSH)</term>
<term>Plant Diseases (genetics)</term>
<term>Plant Proteins (genetics)</term>
<term>Plant Proteins (metabolism)</term>
<term>Plants, Genetically Modified (MeSH)</term>
<term>Populus (genetics)</term>
<term>Proteins (classification)</term>
<term>Proteins (genetics)</term>
<term>Proteins (metabolism)</term>
<term>Recombinant Fusion Proteins (genetics)</term>
<term>Recombinant Fusion Proteins (metabolism)</term>
<term>Tobacco (cytology)</term>
<term>Tobacco (genetics)</term>
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<keywords scheme="KwdFr" xml:lang="fr"><term>Arabidopsis (génétique)</term>
<term>Données de séquences moléculaires (MeSH)</term>
<term>Génome végétal (MeSH)</term>
<term>Immunité innée (génétique)</term>
<term>Maladies des plantes (génétique)</term>
<term>Microscopie confocale (MeSH)</term>
<term>Oryza (génétique)</term>
<term>Phylogenèse (MeSH)</term>
<term>Populus (génétique)</term>
<term>Protéines (classification)</term>
<term>Protéines (génétique)</term>
<term>Protéines (métabolisme)</term>
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<term>Protéines à fluorescence verte (génétique)</term>
<term>Protéines à fluorescence verte (métabolisme)</term>
<term>Régulation de l'expression des gènes végétaux (MeSH)</term>
<term>Séquence d'acides aminés (MeSH)</term>
<term>Séquençage par oligonucléotides en batterie (méthodes)</term>
<term>Tabac (cytologie)</term>
<term>Tabac (génétique)</term>
<term>Végétaux génétiquement modifiés (MeSH)</term>
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<term>Plant Proteins</term>
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<term>Recombinant Fusion Proteins</term>
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</keywords>
<keywords scheme="MESH" qualifier="cytologie" xml:lang="fr"><term>Tabac</term>
</keywords>
<keywords scheme="MESH" qualifier="cytology" xml:lang="en"><term>Tobacco</term>
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<term>Oryza</term>
<term>Plant Diseases</term>
<term>Populus</term>
<term>Tobacco</term>
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<term>Immunité innée</term>
<term>Maladies des plantes</term>
<term>Oryza</term>
<term>Populus</term>
<term>Protéines</term>
<term>Protéines de fusion recombinantes</term>
<term>Protéines végétales</term>
<term>Protéines à fluorescence verte</term>
<term>Tabac</term>
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<term>Plant Proteins</term>
<term>Proteins</term>
<term>Recombinant Fusion Proteins</term>
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<term>Protéines de fusion recombinantes</term>
<term>Protéines végétales</term>
<term>Protéines à fluorescence verte</term>
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<keywords scheme="MESH" qualifier="méthodes" xml:lang="fr"><term>Séquençage par oligonucléotides en batterie</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term>
<term>Gene Expression Regulation, Plant</term>
<term>Genome, Plant</term>
<term>Microscopy, Confocal</term>
<term>Molecular Sequence Data</term>
<term>Phylogeny</term>
<term>Plants, Genetically Modified</term>
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<keywords scheme="MESH" xml:lang="fr"><term>Données de séquences moléculaires</term>
<term>Génome végétal</term>
<term>Microscopie confocale</term>
<term>Phylogenèse</term>
<term>Régulation de l'expression des gènes végétaux</term>
<term>Séquence d'acides aminés</term>
<term>Végétaux génétiquement modifiés</term>
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<front><div type="abstract" xml:lang="en">As the largest class of disease resistance R genes, the genes encoding nucleotide binding site and leucine-rich repeat proteins ("NBS-LRR genes") play a critical role in defending plants from a multitude of pathogens and pests. The diversity of NBS-LRR genes was examined in the Populus trichocarpa draft genome sequence. The NBS class of genes in this perennial tree is large and diverse, comprised of approximately 400 genes, at least twice the complement of Arabidopsis. The NBS family can be divided into multiple subfamilies with distinct domain organizations. It includes 119 Coiled-Coil-NBS-LRR genes, 64 TIR-NBS-LRR genes, 34 BED-finger-NBS-LRR, and both truncated and unusual NBS- and NBS-LRR-containing genes. The transcripts of only 34 NBS-LRR genes were detected in rust-infected and non-infected leaves using a whole-genome oligoarray. None showed an altered expression two days post inoculation.</div>
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<Abstract><AbstractText>As the largest class of disease resistance R genes, the genes encoding nucleotide binding site and leucine-rich repeat proteins ("NBS-LRR genes") play a critical role in defending plants from a multitude of pathogens and pests. The diversity of NBS-LRR genes was examined in the Populus trichocarpa draft genome sequence. The NBS class of genes in this perennial tree is large and diverse, comprised of approximately 400 genes, at least twice the complement of Arabidopsis. The NBS family can be divided into multiple subfamilies with distinct domain organizations. It includes 119 Coiled-Coil-NBS-LRR genes, 64 TIR-NBS-LRR genes, 34 BED-finger-NBS-LRR, and both truncated and unusual NBS- and NBS-LRR-containing genes. The transcripts of only 34 NBS-LRR genes were detected in rust-infected and non-infected leaves using a whole-genome oligoarray. None showed an altered expression two days post inoculation.</AbstractText>
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<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Kohler</LastName>
<ForeName>Annegret</ForeName>
<Initials>A</Initials>
<AffiliationInfo><Affiliation>Unité Mixte de Recherche INRA/UHP 1136 Interactions Arbres/Microorganismes, Institut National de la Recherche Agronomique, Centre de Recherches de Nancy, 54280 Champenoux, France. kohler@nancy.inra.fr</Affiliation>
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<ForeName>Sébastien</ForeName>
<Initials>S</Initials>
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<ForeName>Marie</ForeName>
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<Author ValidYN="Y"><LastName>Geelen</LastName>
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<Author ValidYN="Y"><LastName>Duchaussoy</LastName>
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<Author ValidYN="Y"><LastName>Meyers</LastName>
<ForeName>Blake C</ForeName>
<Initials>BC</Initials>
</Author>
<Author ValidYN="Y"><LastName>Boerjan</LastName>
<ForeName>Wout</ForeName>
<Initials>W</Initials>
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<Author ValidYN="Y"><LastName>Martin</LastName>
<ForeName>Francis</ForeName>
<Initials>F</Initials>
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Genome-wide identification of NBS resistance genes in Populus trichocarpa.

Genome-wide identification of NBS resistance genes in Populus trichocarpa.

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